Yes, I just use the audio from the camera to align the tracks from the zoom, unless something went wrong with the zoom, or in a case where there is a good audio track on the camera, like a talking head shot where the camera was not far away, or I ran the line out from the Zoom over to the camera and the audio track was fine.
There is a great app called Pluraleyes, that is excellent at aligning audio in tough situations and multicam/multi recorder. It looks like there have been some massive updates on it (price went up to). I have an older version. This is so quick and easy if you have multiple cameras, recorders and takes. Just load em in, hit the button, and it all syncs, then it will export to your NLE as Multicam.
I use Final Cut Pro X and it does a pretty good job on it's own most of the time (not as good as Pluraleyes on complex situations or where quality is poor). Premier will sync audio as well.
I do also align it by eye with the waveforms. For live music performance, I will sometimes take Different angles from the same song but maybe a different verse or chorus and align them by eye.
We have tons of audio gear, so my challenge is keeping it simple and portable and doing things with one Zoom (h4n), and occasionally a couple of additional mics. I am not doing a lot of music related projects. In fact I have been steering clear of it for the most part. I find it stressful without trying to make a huge production of it. And when I do not drag lots of gear, lights, help, etc... it doesn't turn out so great. I think I would like to go along as a second and let someone else be in charge of it.
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